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NBCR Summer Institute 2008 Program for Mini-symposium and Training Sessions |
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| Mini Symposium: Cyberinfrastructure for Biomedicine I | |||||||
| 7:30 am | Registration and poster setup | SDSC/Calit2 Synthesis Center | Coordinator: Nancy Jensen | ||||
| Aug 4, 2008, Monday |
8:00 am | Opening Remarks | John Wooley, Ph.D., UCSD |
Chair: Wilfred Li, Ph.D. | |||
| 8:10 am | Cyberinfrastructure for Biomedicine | Peter W. Arzberger, Ph.D., UCSD |
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Session I: Multiscale modeling and visualization |
Chair: Michel Sanner, Ph.D. | ||||||
| 8:30 am | Translating microscopic imaging into multi-scale 3D structural models of normal and failing cardiomyocytes |
Masahiko Hoshijima, M.D., Ph.D., UCSD |
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| 9:15 am | Multi-scale Geometric Modeling of Biomedical Systems: Bridging the Gap between Imaging and Simulation | Zeyun Yu, Ph.D., UCSD |
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| 10:00 am | coffee break |
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| 10:15 am | Multi-scale Morse Theory and Data Streaming for Science Discovery | Valerio Pascucci, Ph.D., LLNL |
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| 11:00 am | VisTrails: Provenance and Data Exploration | Claudio Silva, Ph.D., U. Utah |
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| 11:45 am | Visual tools for building, visualizing and interacting with multiscale models |
Michel Sanner, Ph.D., NBCR/TSRI |
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| 12:30 pm | Lunch Buffet and Poster Session | Coordinator: Teri Simas | |||||
| Session II: Computer Aided Drug Design | Chair: Andy McCammon, Ph.D. | ||||||
| 2:00 pm | Structure-based drug design targeting HIV-1 reverse transcriptase: overcoming resistance by inhibitor strategic flexibility | Eddy Arnold, Ph.D., Rutgers U. |
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| 2:45 pm | Docking and Design with AutoDock | David Goodsell, Ph.D., TSRI |
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| 3:30 pm | Tackling Receptor Flexibility in Computer-Aided Drug Design | Rommie Amaro, Ph.D., UCSD | |||||
| 4:15 pm | coffee break | ||||||
| 4:30 pm | Identification of a novel chromophore to restore vision in macular degeneration | Anne Hanneken, M.D., Scripps Memorial Hospital |
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| 5:15 pm | The Fluctuating Biological Target of Multiple Conformations: Using Freeze-frame, Click Chemistry in Ligand Design | Palmer Taylor, Ph.D., UCSD |
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| 6:00 pm | Overview of Training Sessions | Wilfred W. Li, Ph.D. |
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| 6:15 pm | Dinner | Cafe Vantanas/Price Center | |||||
| 6:30 pm | Minisymposium speakers dinner | By invitation only | |||||
| Aug 5-8, 2008, Tuesday - Friday |
Training Sessions Schedule available at the NBCR Public Wiki | ||||||
| Date | Period | Tracks | Session Chairs/Coordinator | Location | Track Number | ||
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8 am to 12 pm Morning |
Cluster/Grid Computing & Workflow Management | Sriram Krishnan, Ph.D. Guillaume Vareille, Ph.D. |
EBU1,room 5702, Building 600 | 1 | ||
| Programming Scalable Scientific Applications | Michael Holst, Ph.D. Tim Kaiser, Ph.D. |
EBU2, room 239, Building 610 | 2 | ||||
| Multiscale Imaging Analysis and Visualization | Michel Sanner, Ph.D. Zeyun Yu, Ph.D. |
PFBH, room 161, Building 601 | 6 | ||||
1 pm to 5 pm Afternoon |
Virtual Screening & Computer Aided Drug Design | Rommie Amaro, Ph.D. David Goodsell, Ph.D. |
EBU1,room 5702, Building 600 | 3 |
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| Molecular Electrostatics and Diffusion | Robert Konecny, Ph.D. Gary Huber, Ph.D. |
EBU2, room 239, Building 610 | 5 | ||||
Aug 7, 2008, Thursday |
6 pm | RSVP | Group Dinner and Certificate Presentation | Rock Bottom Brewery | Coordinator: Teri Simas | ||
| Mini Symposium: Cyberinfrastructure for Biomedicine II | |||||||
| 8:00 am | Registration and poster setup | PFBH Fung Auditorium | Coordinator: Nancy Jensen | ||||
| Aug 11, 2008, Monday | Session III: Computational Modeling of Heart Diseases | Chair: Andrew McCulloch, Ph.D. | |||||
| 8:30 am | The reconstruction of the spontaneous action potential of cardiomyocytes in pulmonary vein | Chae Hun Leem, M.D., U. Ulsan |
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| 9:15 am | A concise model for β-adrenergic stimulation of the rabbit ventricular myocyte | Jose Puglisi, Ph.D., UC Davis |
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| 10:00 am | A Bioengineering Model of Coronary Circulation | Ghassan Kassab, Ph.D., IUPUI |
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| 10:45 am | coffee break | ||||||
| 11:00 am | A Role for Finite Element Models in Improving Diagnosis and Treatment of Ischemic Heart Disease | Jeffrey Holmes, M.D., Ph.D., U. Virginia |
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| 11:45 am | Interactions of biventricular pacing with alterations in heart failure | Roy Kerckhoff, Ph.D., UCSD |
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| 12:30 pm | Closing Remakrs | Peter W. Arzberger, Ph.D., UCSD |
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| 12:30 - 2:00 pm | Lunch Buffet and Poster Session | Coordinator: Teri Simas | |||||
| 2 - 5 pm | Training session starts | ||||||
| 6:30 pm | Mini-symposium speakers dinner | By invitation only | |||||
| *Aug 11-13, 2008, Monday - Wednesday |
Training Sessions Schedule available at the NBCR Public Wiki | ||||||
| Date | Period | Tracks | Session Chairs/Coordinator | Location | Track Number | ||
| full day | Computational Cardiac Electrophysiology and Mechanics* | Andrew McCulloch, Ph.D. Roy Kerckhoffs, Ph.D. |
PFBH, room 161, Building 601 | 4 | |||
Aug 12, 2008, Tuesday |
RSVP | Group Dinner and Certificate Presentation | Rock Bottom Brewery | Coordinator: Teri Simas | |||
