Biomedical Computation

Fimo Example Output Files

#pattern name	sequence name	start	stop	strand	score	p-value	q-value	matched sequence
3	lac	33	43	-	20.5071	1.13e-07	0.000388	CCTGGGGTGCC
1	lac	9	26	+	17.5758	4.53e-07	0.000654	TAATGTGAGTTAGCTCAC
1	ara	59	76	-	17.4848	4.91e-07	0.000654	AAGTGTGACGCCGTGCAA
3	trn9cat	36	46	+	20.2214	5.03e-07	0.00086	CCTGGTGTCCC
1	malt	41	58	+	17.1818	6.49e-07	0.000654	AATTGTGACACAGTGCAA
1	deop2	60	77	+	16.0707	1.7e-06	0.00106	AATTGTGATGTGTATCGA
1	ilv	43	60	-	16.0404	1.75e-06	0.00106	AATTGAGGGGTTGATCAC
1	pbr322	57	74	-	15.3737	2.97e-06	0.0015	ATCTGTGCGGTATTTCAC
1	uxu1	17	34	+	15.0202	3.9e-06	0.00168	TGTTGTGATGTGGTTAAC
1	ce1cg	65	82	-	14.8081	4.57e-06	0.00173	TTTTGTGAAAACGATCAA
1	trn9cat	84	101	+	14.3737	6.27e-06	0.00211	AAATGAGACGTTGATCGG
2	ilv	5	12	+	15.7571	6.67e-06	0.0235	CGGCGGGG
1	gale	46	63	-	13.9091	8.7e-06	0.00253	AAGTGTGACATGGAATAA
1	tnaa	75	92	-	13.7475	9.72e-06	0.00253	AAATGTGAATCGAATCAC
1	crp	67	84	-	13.697	1.01e-05	0.00253	TAATGTGACGTCCTTTGC
1	male	14	31	+	13.4545	1.18e-05	0.00268	TTCTGTAACAGAGATCAC
1	cya	50	67	+	13.3838	1.24e-05	0.00268	AGGTGTTAAATTGATCAC
2	male	41	48	+	15.4857	1.48e-05	0.0261	CGGTGGGG
1	ompa	48	65	+	13.0707	1.52e-05	0.00307	ATGCCTGACGGAGTTCAC
1	malk	61	78	+	12.7677	1.85e-05	0.0035	TTTCGTGATGTTGCTTGC
1	tdc	82	99	-	12.6465	2e-05	0.00355	ATATGTGCGACCACTCAC
1	tnaa	71	88	+	12.3737	2.37e-05	0.00398	GATTGTGATTCGATTCAC
1	tdc	78	95	+	10.8788	5.68e-05	0.00904	ATTTGTGAGTGGTCGCAC
1	bglr1	76	93	+	10.0303	8.97e-05	0.0136	AACTGTGAGCATGGTCAT