| Mini Symposium: Cyberinfrastructure for Biomedicine I |
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7:30 am |
Registration and poster setup |
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SDSC/Calit2 Synthesis Center |
Coordinator: Nancy Jensen |
| Aug 4, 2008, Monday |
8:00 am |
Opening Remarks |
John Wooley, Ph.D., UCSD |
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Chair: Wilfred Li, Ph.D. |
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8:10 am |
Cyberinfrastructure for Biomedicine |
Peter W. Arzberger, Ph.D., UCSD |
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Session I: Multiscale modeling and visualization
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Chair: Michel Sanner, Ph.D. |
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8:30 am |
Translating microscopic imaging into multi-scale 3D structural models of normal and failing cardiomyocytes
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Masahiko Hoshijima, M.D., Ph.D., UCSD
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9:15 am |
Multi-scale Geometric Modeling of Biomedical Systems: Bridging the Gap between Imaging and Simulation |
Zeyun Yu, Ph.D., UCSD
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10:00 am |
coffee break
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10:15 am |
Multi-scale Morse Theory and Data Streaming for Science Discovery |
Valerio Pascucci, Ph.D., LLNL
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11:00 am |
VisTrails: Provenance and Data Exploration |
Claudio Silva, Ph.D., U. Utah
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11:45 am |
Visual tools for building, visualizing and interacting with multiscale models
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Michel Sanner, Ph.D., NBCR/TSRI
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12:30 pm |
Lunch Buffet and Poster Session |
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Coordinator: Teri Simas |
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Session II: Computer Aided Drug Design |
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Chair: Andy McCammon, Ph.D. |
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2:00 pm |
Structure-based drug design targeting HIV-1 reverse transcriptase: overcoming resistance by inhibitor strategic flexibility |
Eddy Arnold, Ph.D., Rutgers U.
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2:45 pm |
Docking and Design with AutoDock |
David Goodsell, Ph.D., TSRI
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3:30 pm |
Tackling Receptor Flexibility in Computer-Aided Drug Design |
Rommie Amaro, Ph.D., UCSD |
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4:15 pm |
coffee break |
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4:30 pm |
Identification of a novel chromophore to restore vision in macular degeneration |
Anne Hanneken, M.D., Scripps Memorial Hospital
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5:15 pm |
The Fluctuating Biological Target of Multiple Conformations: Using Freeze-frame, Click Chemistry in Ligand Design |
Palmer Taylor, Ph.D., UCSD
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6:00 pm |
Overview of Training Sessions |
Wilfred W. Li, Ph.D. |
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6:15 pm |
Dinner |
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Cafe Vantanas/Price Center |
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6:30 pm |
Minisymposium speakers dinner |
By invitation only |
Aug 5-8, 2008,
Tuesday – Friday |
Training Sessions Schedule available at the NBCR Public Wiki |
| Date |
Period |
Tracks |
Session Chairs/Coordinator |
Location |
Track Number |
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8 am to 12 pm Morning |
Cluster/Grid Computing & Workflow Management |
Sriram Krishnan, Ph.D.
Guillaume Vareille, Ph.D. |
EBU1,room 5702, Building 600 |
1 |
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Programming Scalable Scientific Applications |
Michael Holst, Ph.D.
Tim Kaiser, Ph.D. |
EBU2, room 239, Building 610 |
2 |
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Multiscale Imaging Analysis and Visualization |
Michel Sanner, Ph.D.
Zeyun Yu, Ph.D. |
PFBH, room 161, Building 601 |
6 |
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1 pm to 5 pm Afternoon |
Virtual Screening & Computer Aided Drug Design |
Rommie Amaro, Ph.D.
David Goodsell, Ph.D. |
EBU1,room 5702, Building 600 |
3 |
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Molecular Electrostatics and Diffusion |
Robert Konecny, Ph.D.
Gary Huber, Ph.D. |
EBU2, room 239, Building 610 |
5 |
| Aug 7, 2008, Thursday |
6 pm |
RSVP |
Group Dinner and Certificate Presentation |
Rock Bottom Brewery |
Coordinator: Teri Simas |
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Mini Symposium: Cyberinfrastructure for Biomedicine II |
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8:00 am |
Registration and poster setup |
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PFBH Fung Auditorium |
Coordinator: Nancy Jensen |
| Aug 11, 2008, Monday |
Session III: Computational Modeling of Heart Diseases |
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Chair: Andrew McCulloch, Ph.D. |
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8:30 am |
The reconstruction of the spontaneous action potential of cardiomyocytes in pulmonary vein |
Chae Hun Leem, M.D., U. Ulsan |
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9:15 am |
A concise model for β-adrenergic stimulation of the rabbit ventricular myocyte |
Jose Puglisi, Ph.D., UC Davis |
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10:00 am |
A Bioengineering Model of Coronary Circulation |
Ghassan Kassab, Ph.D., IUPUI |
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10:45 am |
coffee break |
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11:00 am |
A Role for Finite Element Models in Improving Diagnosis and Treatment of Ischemic Heart Disease |
Jeffrey Holmes, M.D., Ph.D., U. Virginia |
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11:45 am |
Interactions of biventricular pacing with alterations in heart failure |
Roy Kerckhoff, Ph.D., UCSD |
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12:30 pm |
Closing Remakrs |
Peter W. Arzberger, Ph.D., UCSD |
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12:30 – 2:00 pm |
Lunch Buffet and Poster Session |
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Coordinator: Teri Simas |
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2 – 5 pm |
Training session starts |
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6:30 pm |
Mini-symposium speakers dinner |
By invitation only |
*Aug 11-13, 2008,
Monday – Wednesday |
Training Sessions Schedule available at the NBCR Public Wiki |
| Date |
Period |
Tracks |
Session Chairs/Coordinator |
Location |
Track Number |
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full day |
Computational Cardiac Electrophysiology and Mechanics* |
Andrew McCulloch, Ph.D.
Roy Kerckhoffs, Ph.D. |
PFBH, room 161, Building 601 |
4 |
| Aug 12, 2008, Tuesday |
RSVP |
Group Dinner and Certificate Presentation |
Rock Bottom Brewery |
Coordinator: Teri Simas |
